Kayak Whale Watching at San Juan Islands, Washington. The Only Guide You Need

San Juan Islands, Washington is a super-popular whale-watching destination.

If you want to saddle up a sea kayak and get up close and personal with a pod of orcas, this is as good a place as any in the world to do it.

In this post we discuss where you have the best chance of seeing whales, how to access those locations, and when are the best times to try your luck, and rules to keep you out of trouble.

Consider this your definitive guide to kayak whale watching at San Juan Islands, Washington.

Kayak whale watching San Juan Islands v2

Table of Contents

Where are San Juan Islands, Washington?

The San Juan Islands are located in the northwest part of the United States, in the state of Washington.

They are part of the Salish Sea, which connects with the inland waters of Washington and British Columbia, Canada.

You’ll find the The San Juan Islands situated between the northern coast of Washington state and Vancouver Island, British Columbia, located approximately 80 miles north of Seattle, Washington.

The islands are accessible by ferry from various points in Washington, including Anacortes, which serves as a gateway to the San Juan Islands.

The major islands in the San Juan archipelago include San Juan Island (the largest and most populated), Orcas Island, Lopez Island, and Shaw Island, among others.

Which Whales (and Other Species) Will I see at San Juan Islands, Washington?

You’ll have a high probability of seeing:

  1. Orcas (Killer Whales)
  2. Humpback Whales
  3. Minke Whales
  4. Gray Whales (seasonally)

Additionally, you may also encounter other marine species such as Dall’s porpoises, harbor seals, Steller sea lions, bald eagles, seabirds, and various fish species in the waters surrounding the San Juan Islands.

Why Do Whales Go to San Juan Islands, Washington?

Rich Food Supply: The waters surrounding the San Juan Islands offer a plentiful food supply for whales.

The area is known for its productive marine ecosystem, which supports thriving populations of fish, such as salmon, herring, and sand lance.

These fish species attract whales as they migrate through or reside in the region, providing a reliable source of nutrition.

Suitable Habitat: The San Juan Islands offer a diverse and varied marine habitat that appeals to whales.

The islands have a mix of deep channels, shallow bays, kelp forests, and rocky shorelines, providing a range of environments for different whale species.

These varied habitats attract a variety of prey and contribute to the overall health of the ecosystem.

Migration Corridor: The San Juan Islands are located along a major migration corridor for several whale species. As whales undertake their seasonal migrations, they pass through or make use of the sheltered waters around the islands.

The islands’ position in the broader ecosystem makes them a natural stopover or feeding ground for whales during their journeys.

Protected Waters: The San Juan Islands benefit from being part of the Salish Sea, a large and relatively sheltered body of water.

The islands provide protection from the open ocean, creating calmer conditions that are favorable for foraging, breeding, and raising young.

The sheltered nature of the waters can make it an attractive and safe environment for whales.

Resident Orca Community: The Southern Resident orcas, a resident population of orcas, are a notable presence around the San Juan Islands. These orcas have established their home range in the region and are frequently seen in the area.

The specific reasons why they are drawn to the San Juan Islands are likely multifaceted and can include factors such as food availability, social dynamics, and historical patterns.

What Time of the Year is Best to See Whales at San Juan Islands?

Orcas (Killer Whales): You can see the resident orcas, which include the Southern Resident orcas, around the San Juan Islands throughout the year, as they are consistently present in the area.

However, the best time to increase your chances of spotting them is typically from April to October.

Humpback Whales: You can more commonly observe Humpback whales in the San Juan Islands during their feeding season, which typically occurs from May to October.

During this time, they visit the area to feed on the abundant fish populations, such as herring and sand lance.

Gray Whales: Gray whales are occasional visitors to the San Juan Islands as they migrate between their feeding grounds in Alaska and their breeding grounds in Mexico.

Your best opportunity to spot them is during their migration periods, which occur in the spring (March to May) and fall (October to December).

What are the Paddling Conditions at San Juan Islands, Washington?

Tides: The San Juan Islands experience significant tidal fluctuations, with some of the highest tidal ranges in North America. This can make kayak whale watching a challenge. It’s important to be aware of the tidal currents, as they can impact your paddling experience and route planning. Pay attention to tidal charts and plan your paddling trips accordingly.

Currents: The currents in the waters around the San Juan Islands can be strong, particularly in narrow channels and near points or headlands.

It’s advisable to have knowledge and experience in handling currents before venturing out.

Paddling with the current can enhance your experience, but paddling against strong currents can be challenging and may require more advanced skills.

Wind: Wind conditions can vary in the San Juan Islands, affecting the paddling experience. Check weather forecasts and preparee for changing wind conditions during your paddle.

Weather: The weather conditions in the San Juan Islands can change rapidly, so it’s crucial to prepare for different weather scenarios.

Fog, rain, and mist are not uncommon in the region.

Boat Traffic: The San Juan Islands are a popular destination for boating, including recreational boats, ferries, and commercial vessels.

Be aware of boat traffic and follow navigational rules to ensure your safety while paddling. Stay visible and use appropriate safety equipment such as kayak lights and reflectors.

Wildlife Considerations: While paddling in the San Juan Islands, you may encounter various wildlife, including whales, seals, and seabirds. Familiarize yourself with guidelines for wildlife viewing and practice responsible wildlife interaction.

Navigation: The San Juan Islands have numerous islands, channels, and rocky shorelines. Proper navigation skills and the use of nautical charts or GPS devices are important for safely navigating the area. Familiarize yourself with the local geography, landmarks, and potential hazards.

Where Exactly Might I See Whales at San Juan Islands, Washington?

Kayak whale watching locations in the San Juan Islands can vary depending on the movement and behavior of the whales. However, there are several areas around the San Juan Islands where you have a higher chance of spotting whales.

Haro Strait

This strait, located between San Juan Islands and Vancouver Island, is a major pathway for marine wildlife, including whales.

It is known for frequent sightings of orcas, particularly the Southern Resident orcas.

Put-in at Lime Kiln Point State Park, San Juan Islands or San Juan County Park, San Juan Islands.

Rosario Strait

Situated between Orcas Island and the mainland, Rosario Strait is another productive area for whale sightings. It is frequented by both transient orcas and humpback whales.

Put-in at Obstruction Pass State Park, Orcas Island or Odlin County Park, Lopez Island.

Juan de Fuca Strait

This strait, located to the south of the San Juan Islands, is a renowned area for whale sightings. Humpback whales, orcas, and gray whales have been observed in the waters of Juan de Fuca Strait.

Put-in at Port Angeles Harbor, Port Angeles, or Dungeness Spit, Sequim.

Strait of Georgia

Situated to the north of the San Juan Islands, the Strait of Georgia is known for its diverse marine life, including orcas and humpback whales. The Canadian waters in this area, such as those around Saturna Island and the Gulf Islands, are popular for whale watching.

Put-in at Boundary Bay Regional Park, Delta, British Columbia, or Deep Cove, North Vancouver, British Columbia. That’s right, Canada!

Lime Kiln Point State Park

Located on the western side of San Juan Islands, folks often refer to Lime Kiln Point State Park as “Whale Watch Park.” It offers excellent opportunities for shore-based whale watching, as it overlooks Haro Strait, a known pathway for orcas. From the park’s shoreline, you can sometimes see orcas passing by.

Put-in at Lime Kiln State Park, Deadman Bay, or Jackson Beach, Friday Harbor.

San Juan Islands Visitors Bureau v2 Map

Where are the Best Kayak Put-In Locations at San Juan Islands?

Jackson Beach, Friday Harbor (San Juan Islands)

Jackson Beach, located near Friday Harbor, offers a public boat launch area for kayakers. It provides easy access to the waters surrounding San Juan Island, which whales frequent.

Jackson Beach Park, 400 First Street, Friday Harbor, WA 98250

Roche Harbor Marina, Roche Harbor (San Juan Islands)

Roche Harbor Marina has a boat launch area available for kayakers. It is situated on the northwest side of San Juan Islands, offering convenient access to whale watching areas.

Roche Harbor Marina, 248 Reuben Memorial Drive, Friday Harbor, WA 98250

West Beach Resort, Orcas Island

West Beach Resort has a public kayak launch area that allows easy entry into the waters around Orcas Island. From here, you can explore areas known for whale sightings.

West Beach Resort, 190 Waterfront Way, Eastsound, WA 98245

Deer Harbor Marina, Orcas Island

Deer Harbor Marina on Orcas Island has a public launch site for kayaks. It provides access to the surrounding waters, where you may have the chance to encounter whales.

Deer Harbor Marina, 5164 Deer Harbor Road, Eastsound, WA 98245

Snug Harbor Resort, San Juan Islands

Snug Harbor Resort, located on the west side of San Juan Islands, has a boat ramp for kayakers. Launching from here allows you to explore nearby whale watching hotspots.

Snug Harbor Resort, 1997 Mitchell Bay Road, Friday Harbor, WA 98250

Fisherman Bay Spit, Lopez Island

Fisherman Bay Spit on Lopez Island has a public access area for kayakers. It offers a convenient launch point to explore the waters around Lopez Island, where whales are occasionally spotted.

Fisherman Bay Spit, No specific street address available, Lopez Island, WA 98261

Doe Bay, Orcas Island

Doe Bay is a picturesque location on Orcas Island with public access for kayakers. It provides opportunities to explore nearby waters known for whale sightings.

Doe Bay Resort and Retreat, 107 Doe Bay Road, Olga, WA 98279

Who are the Best Guided Tour Operators at San Juan Islands, Washington?

San Juan Safaris / San Juan Island Outfitters

San Juan Island Outfitters is the sister company of San Juan Safaris. It is a popular tour operator providing services out of Roch Harbor and Friday Harbor.

The company offers guided kayak whale watching tours that provide informative commentary about the local marine life, including orcas, humpback whales, and other wildlife in the region.

San Juan Island Outfitters is the exclusive kayak operator from Roche Harbor, allowing access to areas where no other kayak company can go.

The company supplies all kayaking equipment, a professional guide and even free transportation from Friday Harbor, if desired.

Prices start at $125+ for three hours.

www.sanjuanislandoutfitters.com

1 (866) 810-1483

Crystal Seas Kayaking

Crystal Seas Kayaking is a tour operator based in Friday Harbor, Washington. The company specializes in kayak tours, including whale watching excursions in the San Juan Islands.

Crystal Seas Kayaking’s whale watching tours provide guests with the opportunity to encounter and observe whales in their natural habitat. The tours aim to combine the thrill of kayaking with the chance to witness local wildlife up close while adhering to responsible wildlife viewing practices.

The company emphasizes small group sizes and provides participants with high quality kayaking equipment.

Prices start at $125+ for three hours.

www.crystalseas.com

1 (877) 732-7877

Sea Quest Kayak Tours

Sea Quest Kayak Tours is a reputable tour operator based in Friday Harbor, Washington, offering guided kayak whale watching tours in the San Juan Islands.

The company places a special emphasis on whale watching as part of their kayak tours. Their experienced guides are knowledgeable about the local marine environment and the behavior of whales.

They prioritize safety and provide participants with high-quality kayaks, paddles, and safety gear.

Prices start at $109+ for three hours.

www.sea-quest-kayak.com

1 (360) 378-5767

Anacortes Kayak Tours

Anacortes Kayak Tours is a tour operator based in Anacortes, Washington, that specializes in guided kayak tours in the San Juan Islands.

The company specializes in whale watching during their kayak tours. Their expert guides possess extensive knowledge of the local marine environment and understand whale behavior.

Anacortes seeks to maintain small group sizes and provides participants with all necessary kayaking and safety gear.

Prices start at $99+ for three hours.

www.anacorteskayaktours.com

1 (800) 992-1801

San Juan Kayak Expeditions

San Juan Kayak Expeditions is a well-established tour operator based in Friday Harbor, Washington, specializing in kayak whale watching tours in the San Juan Islands, Washington archipelago.

The company offers a range of guided kayak expeditions, from half-day trips to multi-day adventures.

They incorporates whale watching into some of their kayak expeditions. Their guides are experienced in the local marine environment and whale behavior.

San Juan Kayak Expeditions maintains small group sizes and provides participants with all necessary kayaking and safety equipment.

Prices start at $129+ for three hours.

www.sanjuankayak.com

1 (360) 378-4436

Guided Tour Operators San Juan

What are the Actual Whale Watching Rules I Should Know?

When kayak whale watching at San Juan Islands, Washington, the following guidelines are in place to ensure the safety of the whales and minimize disturbance to their natural behaviour.

Approach with caution

Vessels should approach an area of known or suspected whale activity with extreme caution.

Slow approach zone

A vessel within 1⁄2 mile (800 yards) of a whale is considered to be in the slow approach zone and should operate at a low wake speed.

Slow zone

A vessel within 1⁄4 mile of a whale is considered to be in the slow zone and should operate at a recommended speed of 7 knots or less, with a reduced wake.

Reverse speed transition

The speed transition should be observed in reverse when departing the vicinity of whales.

Shut off underwater transducers

When possible, all sonar, depth sounders, fish finders, and other underwater transducers should be shut off when a vessel is in the vicinity of whales.

Lighthouse special operating area

Vessels should remain a minimum of 1⁄2 mile (800 yards) from the light beacon of the Lighthouse at Lime Kiln State Park on San Juan Islands when whales are in the vicinity.

West side of San Juan Island special operating area

Vessels should remain a minimum of 1⁄4 mile (400 yards) from the main shoreline of the west side of San Juan Island between Eagle Point and Mitchell Point when whales are present.

Race Rocks special operating area

Vessels should observe the “Go Slow Zone” which extends 1/8 mile (220 yards) from any rock or landmass around Race Rocks.

Furthermore, vessels should reduce speed to approximately 7 knots at this distance.

Finally, vessels should remain as close to mid-channel as possible between the major rock outcroppings.

Drifting is encouraged, and vessels should adjust their speed based on weather conditions.

Vessels should remain 1/8 mile (220 yards) outside the Go Slow Zone when any whale species are present in the Race Rocks Reserve.

These guidelines are in place to ensure the safety of the whales and minimize disturbance to their natural behavior.

Where are the Areas I Can’t Kayak? Whale Protection Zones

Whale Protection Zones are typically identified and marked through a combination of regulations, signage, and navigational aids.

Use the common methods below to identify Whale Protection Zones:

Regulatory Designations

Whale Protection Zones are established through regulations implemented by relevant authorities.

At San Juan Islands, the authority that determines the location of Whale Protection Zones is the Washington Department of Fish and Wildlife (WDFW).

The National Oceanic and Atmospheric Administration (NOAA) and local county or city agencies may also have involvement.

These regulations define the boundaries and specific rules for operating vessels within the designated zones.

Nautical Charts

Whale Protection Zones may be indicated on nautical charts used by mariners. These charts display the boundaries and provide information on restricted areas, speed limits, or minimum approach distances in order to protect whales.

You can consult public NOAA nautical charts in the U.S. and Canadian Hydrographic Service (CHS) in Canada as well as private charts from Navionics or Garmin.

Buoys and Markers

In some cases, physical markers such as buoys or signs may be placed to indicate the boundaries of Whale Protection Zones. These markers serve as visual aids to alert boaters to the presence of the protected area.

Signage

Signs posted at access points, marinas, or popular boating areas may provide information about Whale Protection Zones and remind boaters to adhere to specific guidelines when operating within those zones.

Where are the Whale Protection Zones at San Juan Islands, Washington?

In San Juan Islands, Washington, there are specific Whale Protection Zones established to reduce disturbances to whales and protect their natural behavior.

Here are some notable Whale Protection Zones in the vicinity of San Juan Islands:

Lime Kiln State Park “no-go” zone

This zone is located around the Lighthouse at Lime Kiln State Park on the western shore of San Juan Island. When whales are present in the area, vessels are prohibited from entering the zone, ensuring minimal disturbance to the whales’ behavior.

Cattle Pass “no-go” zone

Cattle Pass, located between San Juan Island and Lopez Island, is another area where a Whale Protection Zone is enforced. When whales are present, vessels are prohibited from entering the zone to prevent disruption to the whales’ natural activities.

These Whale Protection Zones are implemented to safeguard the well-being of the whales and promote responsible whale-watching practices.

Penalties

The penalties for breaking the rules within whale protection zones can vary depending on the specific regulations and the severity of the violation.

Generally, penalties may include fines, citations, or legal action.

Paddlers at San Juan Islands

Parting Thoughts About Kayak Whale Watching at San Juan Islands, Washington

Kayak whale watching at San Juan Islands, Washington offers a unique and intimate experience. Here are a few lesser-known, unique aspects to consider:

Up-close encounters

Kayaking brings you closer to the water’s surface, providing a more immersive experience with the whales. Being at eye level allows for a deeper connection and appreciation of their size and behavior.

Quiet and Non-intrusive

Kayaks are silent and non-disruptive, which can result in less disturbance to the whales compared to larger boats.

Increased Sensory Experience

Kayaking allows you to fully experience the sights, sounds, and smells of the marine environment. You can hear the sounds of the whales’ blows, feel the ocean breeze, and witness other wildlife and natural elements surrounding you.

Maneuverability and Flexibility

Kayaks offer greater maneuverability and access to shallower areas where larger vessels may not be able to reach. This can provide opportunities to explore nooks and crannies of the coastline and potentially encounter whales in more secluded spots.

Wildlife Diversity

While the focus is primarily on whales, kayaking at San Juan Islands allows you to appreciate the diverse marine ecosystem. You may encounter other marine wildlife such as seals, sea lions, porpoises, and a variety of seabirds, as well.

Remember that while kayaking offers unique advantages, it’s vital to prioritize safety, respect wildlife guidelines, and adhere to responsible whale-watching practices.

Be sure to acquire the necessary skills, knowledge, and equipment, and follow the guidelines provided by local authorities or experienced guides to have a great whale-watching experience on a kayak in and around the San Juan Islands.